| Maranatha Christian Academy ✓ | Shawnee | K-12 | 550 | 15.5 | Christian (nondenominational) |
| Central Christian Academy ✓ | Wichita | PreK-12 | 505 | 12.1 | Christian (nondenominational) |
| Sunrise Christian Academy ✓ | Wichita | PreK-12 | 466 | 8.4 | Christian (nondenominational) |
| Classical School of Wichita ✓ | Wichita | K-12 | 449 | 10 | Christian (nondenominational) |
| Cair Paravel Latin School ✓ | Topeka | PreK-12 | 432 | 12.1 | Christian (nondenominational) |
| Life Preparatory Academy ✓ | Park City | K-12 | 407 | 14 | Christian (nondenominational) |
| Berean Academy ✓ | Elbing | K-12 | 350 | 13.9 | Christian (nondenominational) |
| Veritas Christian School | Lawrence | PreK-12 | 237 | 11 | Christian (nondenominational) |
| Central Christian Schools ✓ | Hutchinson | K-12 | 189 | 8.6 | Christian (nondenominational) |
| Elyria Christian School ✓ | McPherson | K-12 | 187 | 10.1 | Christian (nondenominational) |
| Bethany Lutheran School ✓ | Overland Park | K-8 | 185 | 16.7 | Lutheran Church (Missouri Synod) |
| Holy Cross Lutheran School ✓ | Wichita | PreK-8 | 182 | 9.6 | Lutheran Church (Missouri Synod) |
| Overland Christian Schools ✓ | Overland Park | PreK-12 | 182 | 10.2 | Christian (nondenominational) |
| Bishop Seabury Academy ✓ | Lawrence | 6-12 | 179 | 6.9 | Episcopal |
| Christ Lutheran School ✓ | Overland Park | K-8 | 154 | 10.4 | Lutheran Church (Missouri Synod) |
| Shawnee Mission Christian School | Westwood | K-12 | 154 | 9.2 | Baptist |
| Heritage Christian School ✓ | Topeka | PreK-12 | 141 | 8.1 | Christian (nondenominational) |
| Hope Lutheran School ✓ | Shawnee | PreK-8 | 136 | 11.1 | Lutheran Church (Missouri Synod) |
| Trinity Lutheran School ✓ | Atchison | PreK-8 | 132 | 14 | Lutheran Church (Missouri Synod) |
| Midland Adventist Academy ✓ | Shawnee | K-12 | 127 | 9.4 | Seventh-Day Adventist |
| Pilgrim Christian School | Hutchinson | K-12 | 117 | 10.2 | Mennonite |
| Fellowship Baptist School | Liberal | K-12 | 115 | 11.2 | Baptist |
| Cornerstone Classical School | Salina | PreK-12 | 110 | 8.9 | Calvinist |
| Christian Learning Center | Fort Scott | PreK-12 | 102 | 8.5 | Christian (nondenominational) |
| Tyro Community Christian School ✓ | Tyro | K-12 | 89 | 8.6 | Christian (nondenominational) |
| Independence Bible School | Independence | PreK-12 | 87 | 7.4 | Christian (nondenominational) |
| Ark City Christian Academy | Arkansas City | PreK-12 | 86 | 9.2 | Christian (nondenominational) |
| Genesis Christian School | Tonganoxie | PreK-8 | 81 | 7.4 | Christian (nondenominational) |
| Wellington Christian Academy ✓ | Wellington | PreK-7 | 76 | 8.4 | Christian (nondenominational) |
| Chanute Christian Academy | Chanute | PreK-12 | 75 | 6.2 | Christian (nondenominational) |
| Emporia Christian School | Emporia | K-8 | 73 | 6.5 | Christian (nondenominational) |
| Fort Scott Christian Heights | Fort Scott | PreK-12 | 72 | 7.1 | Church of God |
| Heartland Christian School ✓ | Colby | PreK-11 | 71 | 6.4 | Christian (nondenominational) |
| Linn Lutheran School ✓ | Linn | 1-8 | 68 | 14.8 | Lutheran Church (Missouri Synod) |
| Central Kansas Christian Academy ✓ | Great Bend | K-8 | 68 | 6.6 | Christian (nondenominational) |
| Newton Bible Christian School ✓ | Newton | PreK-8 | 65 | 9.4 | Christian (nondenominational) |
| Good Shepherd Lutheran School ✓ | Marysville | K-8 | 60 | 12 | Lutheran Church (Missouri Synod) |
| Trinity Lutheran School ✓ | Winfield | PreK-8 | 58 | 9.7 | Lutheran Church (Missouri Synod) |
| Zion Lutheran School ✓ | Independence | PreK-8 | 42 | 8.4 | Lutheran Church (Missouri Synod) |
| Wichita Adventist Christian Academy | Wichita | K-9 | 42 | 7.8 | Seventh-Day Adventist |